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For Pandeia Engine
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Installation
Code
We recommend using the Anaconda python distribution.
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v3.0/v3.1/v3.2
Python Requirements:
| Required | Recommended |
|---|---|
python 3.8+ | 3.11.3 |
numpy 1.17+ | 1.23.5 |
scipy | 1.10.1 |
astropy 5+ | 5.2.2 |
| photutils | 1.7.0 |
| synphot 1.0+ | 1.2.0 |
| stsynphot 1.0+ | 1.2.0 |
| six | 1.16.0 |
| setuptools | 67.7.0 |
Installing the Pandeia Engine requires a python environment with the dependencies listed above, a set of telescope-specific datafiles, and an optional (but highly recommended) second set of data files for additional spectral manipulation capabilities.
Code
The engine can be installed with
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condapip createinstall -n pandeia stsci numpy scipy=1.1 astropy=2 photutils pysynphot setuptools python.engine==3.6 |
from a terminal with access to the conda environment.
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or for Roman
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pip install pandeia.engine==1.53.1 |
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| Warning |
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| We highly recommend installing into a fresh python environment, such as ones provided by the Anaconda Python distribution, to avoid problems. If you experience issues after installing the Pandeia Engine, consider starting again with a fresh python installation and a clean new set of data files. |
Then set up the data files.
Data
Required Data
In order to function, the Pandeia Engine requires one * set of reference data (containing instrument definitions):
- James Webb Space Telescope: https://stsci.app.box.com/v/pandeia-refdata-v3p2-v1p5p1jwst
- Nancy Grace Roman Space Telescope: https://stsci.box.com/v/pandeia-refdata-v1p5p1v3p1-wfirstroman
Download and untar the files to a suitable location.
Environment variable: $pandeia_refdata must point to the location of the top of the data file tree (the
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directory containing the VERSION_PSF
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file)
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You CAN untar both sets of files to the same location and run calculations for Webb and Roman. The sole difference between the packages are the jwst/ and roman/ directories (and the VERSION_PSF file, to reflect that Roman PSFs were regenerated with WebbPSF 1.0, instead of WebbPSF 1.1). You can either untar the second telescope on top of the first one and overwrite any files when prompted, or copy just the second telescope's directory into the $pandeia_refdata location. |
Recommended
*Both telescope datasets may be untarred to the same location to produce an engine that can work with either telescope; any files the two packages have in common may be overwritten.
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Data
- An additional dataset: httphttps://archive.stsci.edu/pub/hst/pysynphot/hlsp/reference-atlases can be used to provide more spectroscopic functionality (phoenix spectral models, normalization by HST bandpasses, normalizing in among others).
Once untarred, the files will produce a directory tree of grp/hst/cdbsredcat/trds. The pandeia.engine uses the contents of the trds directory.
Environment variable: $PYSYN_CDBS must point to the cdbs trds directory (NOT grp)
Requirements
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python 2.7+
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numpy 1.13.3+
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scipy >1.4
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astropy 2--3
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pandeia.engine v1.5.1 is the final version compatible with Python 2.7
Verify Installation
Open up a terminal with access to the conda installation, and type
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If properly installed and configured, it should show the refdata version and synphot data directory, like this:
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Pandeia Engine version: 3.2 Pandeia RefData version: 3.2 Pysynphot Data: /your/data/directory/synphot |
or for Roman:
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Pandeia Engine version: 3.1
Pandeia RefData version: 3.1
Pysynphot Data: /your/data/directory/synphot |
Helper Script
The following script (which can also be added to your .bashrc or .bash_profile file) assumes you are operating in a terminal BASH shell where a conda python installation has been installed and activated, that you've installed the pandeia refdata in ${HOME}/data/pandeia, and the cdbs folder from the additional dataset moved and renamed to ${HOME}/data/pysynphotsynphot
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conda config --add channels http://ssb.stsci.edu/astroconda conda create -n pandeia stsci numpy scipy=1.1 astropy=2 python=3.6 mkdir -p ~/anaconda/envs/pandeia/etc/conda/activate.d cat >>~/anaconda/envs/pandeia/etc/conda/activate.d/env_vars.sh <<EOF #!/bin/sh export PYSYN_CDBS=${HOME}/data/pysynphotsynphot export pandeia_refdata=${HOME}/data/pandeia EOF mkdir -p ~/anaconda/envs/pandeia/etc/conda/deactivate.d cat >>~/anaconda/envs/pandeia/etc/conda/deactivate.d/env_vars.sh <<EOF #!/bin/sh unset PYSYN_CDBS unset pandeia_refdata EOF conda activate pandeia pip install pandeia.engine==1.5.1 |
This creates a pandeia environment in an already-existing conda installation (line 2) and installs the pandeia.engine (line 16), and sets up two scripts (line 4, line 10) to automatically set and unset the required environment variables every time you activate and deactivate the pandeia environment.
Once in place, "source"ing this file will set up the pandeia environmentOnce this is done, 'conda activate pandeia' and 'conda deactivate pandeia' should perform all of the setup required.
